Preface |
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xiii | |
Copyright acknowledgments |
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xx | |
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1 | (22) |
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2 | (1) |
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Why conserve biodiversity? |
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2 | (1) |
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Endangered and extinct species |
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3 | (3) |
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What is an endangered species? |
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6 | (1) |
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7 | (2) |
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Recognition of genetic factors in conservation biology |
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9 | (1) |
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What is conservation genetics? |
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9 | (2) |
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How is genetics used to minimize extinctions? |
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11 | (5) |
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Genetic versus demographic and environmental factors in conservation biology |
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16 | (1) |
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What do we need to know to genetically manage threatened species? |
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16 | (2) |
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Methodology in conservation genetics |
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18 | (1) |
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19 | (1) |
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19 | (1) |
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19 | (1) |
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20 | (1) |
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21 | (1) |
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Practical exercises: Categorizing endangement of species |
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22 | (1) |
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23 | (22) |
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Genetics and the fate of endangered species |
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24 | (3) |
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Relationship between inbreeding and extinction |
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27 | (2) |
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Inbreeding and extinction in the wild |
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29 | (7) |
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Relationship between loss of genetic diversity and extinction |
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36 | (3) |
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39 | (1) |
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39 | (1) |
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40 | (1) |
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Practical exercises: Computer projections |
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40 | (5) |
SECTION I EVOLUTIONARY GENETICS OF NATURAL POPULATIONS |
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45 | (27) |
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Importance of genetic diversity |
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46 | (1) |
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What is genetic diversity? |
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47 | (3) |
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Measuring genetic diversity |
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50 | (10) |
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Extent of genetic diversity |
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60 | (6) |
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Low genetic diversity in endangered species |
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66 | (1) |
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What genetic diversity determines evolutionary potential? |
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67 | (1) |
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Variation over space and time |
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67 | (1) |
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What explains differences in levels of genetic diversity? |
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68 | (1) |
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Genetic differences among species |
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68 | (1) |
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68 | (1) |
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69 | (1) |
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70 | (1) |
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Practical exercise: Measuring genetic diversity using microsatellites |
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70 | (2) |
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Characterizing genetic diversity: single loci |
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72 | (24) |
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Describing genetic diversity |
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73 | (1) |
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Frequencies of alleles and genotypes |
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73 | (2) |
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Hardy-Weinberg equilibrium |
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75 | (3) |
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78 | (6) |
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Deviations from Hardy-Weinberg equilibrium |
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84 | (2) |
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Extensions of the Hardy-Weinberg equilibrium |
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86 | (4) |
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More than one locus-linkage disequilibrium |
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90 | (3) |
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93 | (1) |
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94 | (1) |
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94 | (2) |
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Characterizing genetic diversity: quantitative variation |
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96 | (30) |
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Importance of quantitative characters |
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97 | (1) |
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Properties of quantitative characters |
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98 | (2) |
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Basis of quantitative genetic variation |
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100 | (3) |
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Methods for detecting quantitative genetic variation |
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103 | (2) |
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Partitioning genetic and environmental variation |
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105 | (1) |
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Genotype X environment interaction |
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106 | (2) |
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The need for contemporary comparisons and control populations |
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108 | (1) |
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Partitioning of quantitative genetic variation |
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108 | (3) |
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Evolutionary potential and heritability |
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111 | (9) |
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Susceptibility to inbreeding depression |
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120 | (2) |
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Correlations between molecular and quantitative genetic variation |
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122 | (1) |
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Organization of quantitative genetic variation |
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122 | (1) |
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123 | (1) |
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123 | (1) |
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124 | (2) |
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Evolution in large populations. I. Natural selection and adaptation |
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126 | (28) |
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127 | (4) |
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Factors controlling the evolution of populations |
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131 | (2) |
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133 | (12) |
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Selection on quantitative characters |
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145 | (1) |
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146 | (3) |
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149 | (1) |
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149 | (1) |
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150 | (1) |
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150 | (1) |
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151 | (1) |
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Practical exercises: Computer simulations |
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152 | (2) |
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Evolution in large populations. II. Mutation, migration and their interactions with selection |
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154 | (21) |
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Factors controlling the evolution of populations |
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155 | (1) |
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Importance of mutation, migration and their interactions with selection in conservation |
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155 | (1) |
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Origin and regeneration of genetic diversity |
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155 | (1) |
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156 | (4) |
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Selective value of mutations |
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160 | (2) |
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Mutation-selection balance and the mutation load |
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162 | (5) |
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167 | (2) |
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Migration-selection equilibria and clines |
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169 | (4) |
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173 | (1) |
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173 | (1) |
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173 | (2) |
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Evolution in small populations |
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175 | (22) |
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Importance of small populations in conservation biology |
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176 | (2) |
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Impact of small population size: chance effects |
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178 | (9) |
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187 | (1) |
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Measuring population size |
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187 | (3) |
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Selection in small populations |
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190 | (1) |
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Mutation in small populations |
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191 | (1) |
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Mutation-selection equilibrium in small populations |
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192 | (1) |
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193 | (1) |
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194 | (1) |
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194 | (1) |
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195 | (1) |
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Practical exercises: Computer simulations |
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195 | (2) |
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Maintenance of genetic diversity |
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197 | (30) |
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Conservation of genetic diversity |
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198 | (1) |
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Fate of different classes of mutations |
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198 | (1) |
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Maintenance of genetic diversity in large populations |
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199 | (1) |
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Neutral mutations under random genetic drift |
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200 | (3) |
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Selection intensities vary among characters |
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203 | (1) |
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204 | (10) |
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Maintenance of genetic diversity in small populations |
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214 | (7) |
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221 | (1) |
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221 | (1) |
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222 | (1) |
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Practical exercises: Computer simulations |
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223 | (4) |
SECTION II EFFECTS OF POPULATION SIZE REDUCTION |
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Loss of genetic diversity in small populations |
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227 | (27) |
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Changes in genetic diversity over time |
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228 | (1) |
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Relationship between loss of genetic diversity and reduced fitness |
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229 | (2) |
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Effects of sustained population size restrictions on genetic diversity |
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231 | (4) |
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Relationship between population size and genetic diversity in wild populations |
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235 | (4) |
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Effective population size |
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239 | (2) |
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Measuring effective population size |
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241 | (10) |
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251 | (1) |
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252 | (1) |
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252 | (1) |
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Practical exercises: Computer simulations |
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253 | (1) |
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254 | (26) |
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255 | (1) |
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Conservation concerns with inbreeding |
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256 | (1) |
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Inbreeding coefficient (F) |
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256 | (2) |
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Genetic consequences of inbreeding |
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258 | (5) |
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Inbreeding in small populations |
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263 | (6) |
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269 | (2) |
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Breeding systems in nature |
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271 | (1) |
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Regular systems of inbreeding |
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271 | (3) |
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Mutation-selection balance with inbreeding |
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274 | (2) |
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276 | (1) |
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Relationship between inbreeding, heterozygosity, genetic diversity and population size |
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277 | (1) |
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278 | (1) |
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278 | (1) |
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279 | (1) |
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280 | (29) |
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Inbreeding depression in naturally outbreeding species |
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281 | (1) |
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Inbreeding depression in the wild |
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282 | (3) |
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Inbreeding depression due to small population size |
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285 | (1) |
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Inbreeding and extinction |
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286 | (1) |
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Characteristics of inbreeding depression |
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287 | (3) |
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Genetic basis of inbreeding depression |
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290 | (5) |
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295 | (4) |
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Detecting and measuring inbreeding depression |
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299 | (3) |
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Inbreeding and population viability |
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302 | (3) |
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Recovering from inbreeding depression |
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305 | (2) |
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307 | (1) |
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307 | (1) |
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308 | (1) |
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309 | (27) |
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310 | (1) |
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310 | (2) |
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312 | (2) |
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Completely isolated population fragments |
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314 | (10) |
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Measuring population fragmentation: F statistics |
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324 | (3) |
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Gene flow among population fragments |
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327 | (3) |
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330 | (2) |
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Impacts of different population structures on reproductive fitness |
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332 | (1) |
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333 | (1) |
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334 | (1) |
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334 | (2) |
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Genetically viable populations |
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336 | (29) |
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Shortage of space for threatened species |
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337 | (2) |
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339 | (1) |
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Retaining reproductive fitness |
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339 | (2) |
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Retaining evolutionary potential |
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341 | (2) |
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How large are threatened populations? |
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343 | (1) |
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What happens to species with Ne <500? |
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344 | (4) |
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Retaining single locus diversity in the long term |
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348 | (1) |
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Time to regenerate genetic diversity |
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349 | (1) |
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Avoiding accumulation of new deleterious mutations |
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349 | (2) |
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Genetic goals in the management of wild populations |
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351 | (1) |
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Genetic goals in management of captive populations-a compromise |
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352 | (4) |
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The fallacy of small surviving populations |
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356 | (1) |
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357 | (1) |
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358 | (1) |
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358 | (7) |
SECTION III FROM THEORY TO PRACTICE |
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Resolving taxonomic uncertainties and defining management units |
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365 | (30) |
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Importance of accurate taxonomy in conservation biology |
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366 | (4) |
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370 | (1) |
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371 | (1) |
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Higher taxonomic categories |
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371 | (1) |
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372 | (3) |
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Use of genetic markers in delineation of sympartic species |
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375 | (1) |
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Use of genetic markers in delineation of allopatric species |
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376 | (3) |
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Measuring differences between populations: genetic distance |
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379 | (3) |
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Constructing phylogenetic trees |
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382 | (3) |
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385 | (3) |
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Defining management units within species |
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388 | (4) |
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392 | (1) |
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392 | (1) |
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393 | (1) |
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Practical exercise: Building a phylogenetic tree |
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394 | (1) |
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Genetics and the management of wild populations |
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395 | (24) |
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Genetic issues in wild populations |
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396 | (3) |
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Resolving taxonomy and management units |
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399 | (1) |
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Increasing population size |
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399 | (2) |
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Diagnosing genetic problems |
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401 | (1) |
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Recovering small inbred populations with low genetic diversity |
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401 | (3) |
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Genetic management of fragmented populations |
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404 | (6) |
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Genetic issues in reserve design |
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410 | (1) |
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Introgression and hybridization |
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411 | (1) |
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412 | (2) |
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Genetic management of species that are not outbreeding diploids |
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414 | (2) |
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416 | (1) |
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417 | (1) |
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417 | (2) |
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Genetic management of captive populations |
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419 | (29) |
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420 | (2) |
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Stages in captive breeding and reintroduction |
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422 | (1) |
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Founding captive populations |
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423 | (3) |
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Growth of captive populations |
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426 | (1) |
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Genetic management of captive populations |
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427 | (2) |
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Current genetic management of captive populations |
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429 | (10) |
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Captive management of groups |
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439 | (2) |
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Ex situ conservation of plants |
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441 | (1) |
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Reproductive technology and genome resource banks |
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441 | (2) |
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Managing inherited diseases in endangered species |
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443 | (2) |
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445 | (1) |
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446 | (1) |
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446 | (2) |
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Genetic management for reintroduction |
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448 | (23) |
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449 | (3) |
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Genetic changes in captivity that affect reintroduction success |
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452 | (1) |
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Genetic adaptation to captivity |
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452 | (7) |
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Genetic management of reintroductions |
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459 | (4) |
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How successful are reintroductions? |
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463 | (2) |
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465 | (1) |
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Case studies in captive breeding and reintroduction |
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466 | (3) |
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469 | (1) |
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470 | (1) |
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470 | (1) |
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Use of molecular genetics in forensics and to understand species biology |
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471 | (31) |
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Forensics: detecting illegal hunting and collecting |
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472 | (2) |
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An understanding of species' biology is critical to its conservation |
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474 | (1) |
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Gene trees and coalescence |
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475 | (5) |
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Population size and demographic history |
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480 | (5) |
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Gene flow and population structure |
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485 | (6) |
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Reintroduction and translocation |
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491 | (1) |
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Reproduction parentage, founder relationships and sexing |
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492 | (6) |
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498 | (1) |
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499 | (1) |
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499 | (1) |
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500 | (1) |
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500 | (2) |
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The broader context: population viability analysis (PVA) |
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502 | (27) |
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What causes endangerment and extinction? |
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503 | (3) |
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Predicting extinction probabilities: population viability analysis (PVA) |
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506 | (10) |
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Recovering threatened populations |
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516 | (4) |
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How useful are the predictions of PVA? |
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520 | (3) |
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523 | (1) |
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Minimum viable population sizes (MVP) |
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524 | (2) |
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526 | (1) |
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526 | (1) |
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527 | (1) |
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Practical exercises: Population viability analyses |
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527 | (2) |
Take home messages from this book |
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529 | (2) |
Revision problems |
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531 | (2) |
Glossary |
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533 | (13) |
Answers to problems |
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546 | (21) |
References |
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567 | (40) |
Index |
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607 | |